SARS-CoV-2 Enfeksiyonuna Yatkınlıkta Rol Oynayan Genetik Varyasyonlar

Özet

SARS-CoV-2 enfeksiyonunun seyrindeki ve şiddetindeki bireysel farklılıkların temel nedenlerinden biri konakçı genetik varyasyonlarıdır. Virüsün konakçı hücreye girişi, Spike (S) glikoproteininin hücre yüzeyindeki anjiyotensin dönüştürücü enzim 2 (ACE2) reseptörüne bağlanması ve TMPRSS2 gibi proteazlar tarafından parçalanmasıyla başlar. ACE2 genindeki K26R ve S331F gibi varyantlar viral afiniteyi etkilerken, belirli SNP'lerin (S19P, I21V vb.) enfeksiyona duyarlılığı artırdığı, bazılarının ise koruyucu olduğu varsayılmaktadır. Virüsün hücreye girişinde rol oynayan TMPRSS2, Furin, ELANE ve CTSL proteaz genlerindeki polimorfizmler ile bağışıklık yanıtını düzenleyen IFN, IFITM3 (rs12252-C/C), APOE (ε4 alleli), CCR5, HLA (DRB1*08), TNF ve DDR1 (rs4618569) genlerindeki varyasyonların da hastalığın riskini, kuluçka süresini, solunum yetmezliği semptomlarını, klinik şiddetini ve ölüm oranlarını doğrudan etkilediği belirlenmiştir. Küresel çapta popülasyonlar arasında risk allellerinin dağılımı önemli farklılıklar göstermektedir. Sonuç olarak, bu genetik varyasyonların tanımlanması, COVID-19 başta olmak üzere viral enfeksiyonlarda kişiselleştirilmiş tedavi yöntemlerinin geliştirilmesi, tedavi yanıtının öngörülmesi ve hasta takibinin optimize edilmesi açısından kritik bir öneme sahiptir.

Host genetic variations constitute one of the primary reasons underlying individual differences in the course and severity of SARS-CoV-2 infection. Viral entry into host cells initiates with the binding of the Spike (S) glycoprotein to the angiotensin-converting enzyme 2 (ACE2) receptor on the cell surface and its subsequent cleavage by host proteases such as TMPRSS2. While variants like K26R and S331F in the ACE2 gene alter viral affinity, certain SNPs (e.g., S19P, I21V) enhance susceptibility to infection, whereas others are hypothesized to provide a protective effect. Polymorphisms in protease genes involved in viral entry, such as TMPRSS2, Furin, ELANE, and CTSL, alongside variations in immune-regulatory genes including IFN, IFITM3 (rs12252-C/C), APOE (ε4 allele), CCR5, HLA (DRB1*08), TNF, and DDR1 (rs4618569), have been directly associated with modulating infection risk, incubation periods, respiratory symptoms, clinical severity, and mortality rates. Globally, the distribution of these risk alleles exhibits significant differences across various populations. Consequently, characterizing these genetic variations is of critical importance for developing personalized therapeutic modalities, predicting treatment response, and optimizing patient monitoring protocols in COVID-19 and other infectious diseases.

Referanslar

Guo YR, Cao QD, Hong ZS, et al. The origin, transmission and clinical therapies on coronavirus disease 2019 (COVID-19) outbreak - an update on the status. Mil Med Res. 2020;7(1):11. Published 2020 Mar 13. doi:10.1186/s40779-020-00240-0

Abou-Hamdan M, Hamze K, Abdel Sater A, et al. Variant analysis of the first Lebanese SARS-CoV-2 isolates. Genomics. 2021;113(1 Pt 2):892-895. doi: 10.1016/j.ygeno.2020.10.021.

Lippi G, Mattiuzzi C, Henry BM. Updated picture of SARS-CoV-2 variants and mutations. Diagnosis (Berl). 2021;9(1):11-17. doi: 10.1515/dx-2021-0149.

Zhang H, Penninger JM, Li Y, et al. Angiotensin-converting enzyme 2 (ACE2) as a SARS-CoV-2 receptor: molecular mechanisms and potential therapeutic target. Intensive Care Med. 2020. doi:10.1007/s00134-020-05985-9

Wang X, Dhindsa R, Povysil G, et al. Transcriptional Inhibition of Host Viral Entry Proteins as a Therapeutic Strategy for SARS-CoV-2. Preprints 2020, 2020030360 (doi: 10.20944/preprints202003.0360.v1)

Romano M, Ruggiero A, Squeglia F, et al. A Structural View of SARS-CoV-2 RNA Replication Machinery: RNA Synthesis, Proofreading and Final Capping. Cells. 2020 May 20;9(5):1267. doi: 10.3390/cells9051267.

Liu Y, Gayle AA, Wilder-Smith A, et al. The reproductive number of COVID-19 is higher compared to SARS coronavirus. J Travel Med. 2020;27(2). pii: taaa021. doi: 10.1093/jtm/taaa021.

8: Sabino-Silva R, Jardim ACG, Siqueira WL. Coronavirus COVID-19 impacts to dentistry and potential salivary diagnosis. Clin Oral Investig. 2020. doi:10.1007/s00784-020-03248-x.

Ak Ö. Küresel Kabus. Bilim ve Teknik. 2020;1-27. Erişim tarihi: 19.03.2020, Erişim adresi: https://tubitak.gov.tr/sites/default/files/18842/bilim_ve_teknik_coronavirus_hakkinda.pdf

Rothan HA, Byrareddy SN. The epidemiology and pathogenesis of coronavirus disease (COVID-19) outbreak. J Autoimmun. 2020:102433. doi:10.1016/j.jaut.2020.102433.

Chen Y, Shan K, Qian W. Asians do not exhibit elevated expression or unique genetic polymorphisms for ACE2, the cell-entry receptor of SARS-CoV-2. Preprints. 2020; 2020020258 (doi: 10.20944/preprints202002.0258.v2.

Lanjanian H, Moazzam-Jazi M, Hedayati M, et al. SARS-CoV-2 infection susceptibility influenced by ACE2 genetic polymorphisms: insights from Tehran Cardio-Metabolic Genetic Study. Sci Rep 2021;11:1529. https://doi.org/10.1038/s41598-020-80325-x.

Calcagnile M, Forgez P, Iannelli A, et al. Molecular docking simulation reveals ACE2 polymorphisms that may increase the affinity of ACE2 with the SARS-CoV-2 Spike protein. Biochimie. 2021;180:143-148. doi: 10.1016/j.biochi.2020.11.004.

Suryamohan K, Diwanji D, Stawiski EW, et al. Human ACE2 receptor polymorphisms and altered susceptibility to SARS-CoV-2. Commun Biol. 2021; 4: 475. https://doi.org/10.1038/s42003-021-02030-3.

Hashizume M, Gonzalez G, Ono C, et al. Population-Specific ACE2 Single-Nucleotide Polymorphisms Have Limited Impact on SARS-CoV-2 Infectivity In Vitro. Viruses. 2021;13(1):67. doi: 10.3390/v13010067.

Vargas-Alarcón G, Posadas-Sánchez R, Ramírez-Bello J. Variability in genes related to SARS-CoV-2 entry into host cells (ACE2, TMPRSS2, TMPRSS11A, ELANE, and CTSL) and its potential use in association studies. Life Sci. 2020;260:118313. doi: 10.1016/j.lfs.2020.118313.

Torre-Fuentes L, Matías-Guiu J, Hernández-Lorenzo L, et al. ACE2, TMPRSS2, and Furin variants and SARS-CoV-2 infection in Madrid, Spain. J Med Virol. 2021;93(2):863-869. doi: 10.1002/jmv.26319.

Latini A, Agolini E, Novelli A, et al. COVID-19 and Genetic Variants of Protein Involved in the SARS-CoV-2 Entry into the Host Cells. Genes. 2020; 11(9):1010. https://doi.org/10.3390/genes11091010.

Amodio E, Pipitone RM, Grimaudo S, et al. SARS-CoV-2 Viral Load, IFNλ Polymorphisms and the Course of COVID-19: An Observational Study. Journal of Clinical Medicine. 2020; 9(10):3315. https://doi.org/10.3390/jcm9103315.

Everitt AR, Clare S, Pertel T, et al. IFITM3 restricts the morbidity and mortality associated with influenza. Nature. 2012;484(7395):519-23. doi: 10.1038/nature10921.

Zhang Y, Qin L, Zhao Y, et al, Interferon-Induced Transmembrane Protein 3 Genetic Variant rs12252-C Associated With Disease Severity in Coronavirus Disease 2019, The Journal of Infectious Diseases. 2020;222(1):34–37.

Nikoloudis D, Kountouras D, Hiona A. The Frequency of Combined IFITM3 Haplotype Involving the Reference Alleles of Both rs12252 and rs34481144 is in Line with COVID-19 Standardized Mortality Ratio of Ethnic Groups in England. 2020. 10.20944/preprints202005.0273.v1.

Wang C, Zhang M, Garcia G Jr, et al. ApoE-Isoform-Dependent SARS-CoV-2 Neurotropism and Cellular Response. Cell Stem Cell. 2021;28(2):331-342.e5. doi: 10.1016/j.stem.2020.12.018.

Kuo CL, Pilling LC, Atkins JL, et al. APOE e4 Genotype Predicts Severe COVID-19 in the UK Biobank Community Cohort. J Gerontol A Biol Sci Med Sci. 2020;75(11):2231-2232. doi: 10.1093/gerona/glaa131

Hubacek JA, Dlouha L, Dusek L, et al. Apolipoprotein E4 Allele in Subjects with COVID-19. Gerontology. 2021;67(3):320-322. doi: 10.1159/000516200.

Al-Jaf SMA, Niranji SS, Ali HN, et al. Association of Apolipoprotein e polymorphism with SARS-CoV-2 infection. Infect Genet Evol. 2021;95:105043. doi: 10.1016/j.meegid.2021.105043.

Del Ser T, Fernández-Blázquez MA, Valentí M, et al. Residence, Clinical Features, and Genetic Risk Factors Associated with Symptoms of COVID-19 in a Cohort of Older People in Madrid. Gerontology. 2021;67(3):281-289. doi: 10.1159/000513182.

Panda AK, Padhi A, Prusty BAK. CCR5 Δ32 minorallele is associated with susceptibility to SARS-CoV-2 infection and death: An epidemiological investigation. Clin Chim Acta. 2020;510:60-61. doi:10.1016/j.cca.2020.07.012.

Amoroso A, Magistroni P, Vespasiano F, et al. HLA and AB0 Polymorphisms May Influence SARS-CoV-2 Infection and COVID-19 Severity. Transplantation. 2021;105(1):193-200. doi: 10.1097/TP.0000000000003507.

Heidari Nia M, Rokni M, Mirinejad S, et al. Association of polymorphisms in tumor necrosis factors with SARS-CoV-2 infection and mortality rate: A case-control study and in silico analyses. J Med Virol. 2022;94(4):1502-1512. doi: 10.1002/jmv.27477.

Agwa SHA, Kamel MM, Elghazaly H, et al. Association between Interferon-Lambda-3 rs12979860, TLL1 rs17047200 and DDR1 rs4618569 Variant Polymorphisms with the Course and Outcome of SARS-CoV-2 Patients. Genes (Basel). 2021;12(6):830. doi: 10.3390/genes12060830.

Smatti MK, Al-Sarraj YA, Albagha O, et al. Host Genetic Variants Potentially Associated With SARS-CoV-2: A Multi-Population Analysis. Front Genet. 2020;11:578523. doi: 10.3389/fgene.2020.578523.

Gelecek

28 Mart 2022

Lisans

Lisans